Yep, Whole Foods has them (specifically Bowery and Chelsea from what I have seen). I am sure Tribeca does too. Astorie Beer and Cheese (Queens) and Malt and Mold has stuff too. Check Beer Menus. I know shops on Long Island also have some stocked.
Haven't really seen much exciting from them here. Hommel Bier, Aria, Barry Rye, Woodside. They're extremely pricey too.